Guthrie Lab Resources

JOURNALS

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BIOLOGY DATABASES

S. cerevisiae and RNA Databases
Specifically for Protein Databases
Non-cerevisiae organism Databases
Web-based tools

 

OTHER USEFUL SITES

JOURNALS

• Pubmed - NCBI database
• Cell
  
• Genes and Development
  
• Journal of Biological Chemistry
  
• Molecular Cell
• Molecular and Cellular Biology
  
• Nature
  
• Nature Cell Biology
  
• RNA
  
• Science

• Pubmed - NCBI database
• Annual Review of Biochemistry
  
• Current Biology
  
• EMBO Journal
  
• Genetics
  
• Journal of Biochemistry
• Journal of Cell Biology
  
• Journal of Cell Science
  
• Journal of Molecular Biology
  
• Molecular Biology of the Cell
  
• Nucleic Acids Research
• PNAS
  
• Trends in Biochemical Sciences
  
• Trends in Cell Biology
  
• Trends in Genetics
  
• Yeast

• Sacchararomyces Genome Database
  Everything you ever wanted to know about yeast and more
  
  
• Stanford Microarray Database
  Database of all published microarray data from Stanford
  
  
• uRNA Database
  Sequences, phylogenetic data and alignments on uRNAs
  
  
• Small RNA database
  Database of many small RNAs and links to other databases
  
  
• European Bioinformatics Institute
  Databases of nucleic acid, protein sequences and macromolecular structures
  
  
• Ares Lab Yeast Intron Database
  S. cerevisiae intron database
  
  
• SCPD
  Promoter Database of Saccharomyces cerevisiae
  
  

• YPD
  Yeast Protein information provided by Proteome, inc.
  
  
• MIPS
  Munich information center for protein sequences - everything about proteins in cerevisiae, humans and arabidposis.
  
  
• ExPASy Molecular Biology Server
  Swiss Institute of Bioinformatics proteomics server.
  
  
• BMCD ver2
  Biological Macromolecule Crystallization Databse and the NASA Archive for Protein Crystal Growth Data.
  
  
• RCSB Protein Data Bank
  3D biological macromolecular structure database.
  
  

• Flybase
  Drosophila Genome Database.
  
  
• TIGR microbial database
  Genome database for dozens of microbes
  
  
• Wormbase
  C. elegans Database.
  
  
• Cryptococcus neoformans Genome project
  As the name implies...
  
  

• BCM Search Launcher
  Pairwise Sequence Alignment.
  
  
• Public GeneQuiz Server
  Derives functional annotation for protein sequences and provides supporting evidence, including family alignments.
  
  
• Genolevures
  Search by nucleotide or amino acid sequence against several different yeast species.
  
  
• PSIpred
  Protein structure prediction server.
  
  
• Genestream Resource Center
  Sequence alignment resource.
  
  
• Biopolymer Calculator
  From Schepartz lab.
  
  
• Protein Explorer
  U. Mass tool to explore DNA complexed with protein.
  
  
• SCPD
  Promoter Database of Saccharomyces cerevisiae
  
  

• RNA Society
• UCSF Mission Bay Campus
• UCSF core facility for genomics and proteomics
• UCSF Department of Biochemistry and Biophysics
• UCSF Tetrad Graduate Program
• UCSF PIBS Graduate Program
• Bay Area RNA Club
• RNA Web ring
• Cech Lab
• Chanfreau Lab
• DeRisi Lab
• Linder Lab
• Madhani Lab
• Parker Lab
• Staley Lab