University of California San Francisco                August 31, 2008

CURRICULUM VITAE

 

DIDIER Y. R. STAINIER                                                                                  DOB: 10/31/1963

Professor                                                                       citizenship: American (pending)/Belgian

Department of Biochemistry & Biophysics

School of Medicine

 

Co-Director of The Liver Center, Member of the Tetrad and BMS graduate Programs, the Cardiovascular Research Institute, Diabetes Center, Institute for Regeneration Medicine and Human Genetics Institute

Rock Hall Room 384

1550 Fourth Street

University of California, San Francisco

San Francisco, CA  94158-2324

                                                                                                           

email: didier_stainier@biochem.ucsf.edu                                                            

www: http://www.ucsf.edu./dyrslab/                                                      

 

EDUCATION

 

Dates

Institution and Location

Degrees conferred

Major Subject

1979-1981

United World Colleges,

Wales, U.K.

International Baccalaureate, Highest Honors

Biology, Physics, Math

 

1981-1982

Université de Liège,

Liège, Belgium

Certificate in Biology

Biology

1982-1984

Brandeis University,

Waltham, MA

B.A. Summa cum laude

Biology

1984-1990

Harvard University,

Cambridge, MA

Ph.D.

Dr. Walter Gilbert

Biochemistry and Molecular Biology

 

RESEARCH AND PROFESSIONAL EXPERIENCE

 

Principal Positions Held

 

Dates

Institution and Location

Position

1990-1994

Massachusetts General Hospital,

Harvard Medical School, Boston, MA

Postdoctoral Fellow

Dr. Mark Fishman

1995-present

Department of Biochemistry & Biophysics, University of California, San Francisco

Assistant, Associate (2000), Full (2003)

Professor

 

HONORS AND AWARDS

1982-1984

Wien International Scholar, Brandeis University

 

1983

Elihu A. Silver Prize for Undergraduate Research in Science, Brandeis University

 

1984

Dr. Joseph Garrison Parker Prize in Biology, Brandeis University

 

1984

Phi Beta Kappa, Brandeis University

 

1991-1994

Helen Hay Whitney Foundation Postdoctoral Fellow

 

1995

Louis N. Katz Basic Science Research Prize Finalist, American Heart Association

 

1995-2000

Packard Foundation Fellow in Science and Engineering

 

1996-1998

Basil O'Connor Scholar, March of Dimes Foundation

 

2000-2003

Established Investigator, American Heart Association

 

2002

Mossman Award in Developmental Biology, American Association of Anatomists

2003-2004

Annual Byers Award in Basic Science, UCSF

2003

Outstanding Faculty Mentorship Award, UCSF

2003-2006

NIH DEV1, study section Chair

2008

J.W. Jenkinson Memorial Lectureship, University of Oxford

KEYWORDS/RESEARCH INTERESTS

Vertebrate organ formation/cardiovascular development/endoderm, liver, pancreas and gut development and regeneration/stem cell differentiation/lipid transport and metabolism

 

PROFESSIONAL ACTIVITIES

Editorial boards

1997-2007               Editorial Board Member, Developmental Biology

2001-2006               Associate Editor, Developmental Dynamics

2002-2003               Faculty of 1000, Faculty Member

2004-present           Editorial Board Member, Development

2004-present           Editorial Board Member, Zebrafish

2004-present           Editorial Board Member, BMC Developmental Biology

2006-present           Managing Editor, Mechanisms of Development

 

Manuscript review

Nature, Science, Cell, Genes and Development, Developmental Cell, Nature Genetics, Nature Cell Biology, Nature Medicine, Nature Methods, Nature Reviews Genetics, Nature Chemical Biology, PLoS Biology, PLoS Genetics, PNAS, Current Biology, EMBO Journal, TIGS, TCB, Development, Developmental Biology, Developmental Dynamics, Mechanisms of Development, MBC, J. of Experimental Biology, FASEB journal, Zebrafish, Circulation Research, Blood, JCI, Genome Research, Hepatology, Diabetes, Pancreas, Lipids.

 

Grant review

Ad Hoc reviewer for NIH, NSF, HHMI, as well as various scientific organizations in the EU, Canada, the United Kingdom, Ireland, the Netherlands, Belgium, France, Israel, Singapore and Hong Kong.

1996-2000                              American Heart Association (Western Affiliates) study section member,

1999                       National Science Foundation, Developmental mechanisms study section member,

2000                       American Cancer Society (National), DDC Peer Review committee member,

2000-2002               American Heart Association (National Committee) study section member,

2001                       NIH CDF5 study section ad hoc member (plus ad hoc on special study sections, PPGs)

2001                       NASA, Developmental biology study section member

2002-present           NIH ECS, VCMB, MET, SBDD, CADO and GCMB study sections (as well as SEP)

                              ad hoc

2003-2006                              NIH DEV1, study section Chair

2008                       Special Emphasis Panel: Tools for Zebrafish Research, study section Chair

 

Service to Professional Organizations

1998-2000         Member, NIH Advisory Committee on Zebrafish Genetics and Genomics

2001-2004                  Society of Developmental Biology Board of Directors, elected West Coast

                        Representative

2002                 Organizing Committee, 5th International Meeting on Zebrafish Development and

                        Genetics, Madison, WI

2003, 2004        Member, then Chair, Mossman Award Selection Committee, American Association of

                        Anatomists

2004-present     Member, External Advisory Committee, Zebrafish International Resource Center

2004-present     Selection Committee, Strategic Conference of Zebrafish Investigators

2005-present     Member, Zebrafish Steering Committee

2007-present     Member, Scientific Advisory Board, The Regeneration Project

2008                 Co-Organizer, Japanese-Bay Area Vertebrate Organogenesis Conference

 

Other

2003                 External Scientific Advisory Committee, Molecular Cardiovascular Medicine Group,

Leuven, Belgium

2004                 Scientific Advisory Committee for a special publication by Nature entitled: Milestones in

                        Development.

2006                 Keystone Symposia, Development Study Group 

2006-present     Co-Director, USCF Liver Center

2008                 External Scientific Advisory Committee, IMCB, Singapore

INVITED PRESENTATIONS (since 2005)

Named lectures and Plenary talks are indicated in bold.

2005

INTERNATIONAL:

EMBL Mouse Biology Unit, Monterotondo, Rome, Italy

University of Liege, Belgium

Model organisms and innovative approaches in Developmental Biology course, Juquehy, Sao Paulo, Brazil

2nd international meeting of the Latin America Society for Developmental Biology, Guaruja, Brazil

15th International Society for Developmental Biologists Congress, Sydney, Australia; session chair & speaker

Workshop on “Cardiovascular development: towards biomedical applicability”, Andalusia, Spain

 

NATIONAL:

USC School of Medicine

Keystone Symposium on Molecular Biology of Cardiac Diseases and Regeneration, Steamboat Springs, CO

Massachusetts General Hospital, Harvard Medical School, Boston, MA

Cornell Medical School, New York, N.Y.

UCLA, Los Angeles, CA

Pediatric Academic Societies' Annual Meeting, Washington, DC

American Diabetes Association annual meeting, San Diego, CA

Society for Developmental Biology annual meeting, San Francisco, CA, co-organizer, session chair, speaker

Angiogenesis and Microcirculation Gordon Conference, Newport, RI

Zebrafish investigators' workshop, Bar Harbor, ME, selection ctee member and speaker

American Heart Association Meeting, Dallas, TX

University of Utah Medical School, Salt Lake City, UT

University of Pennsylvania School of Medicine, Children’s Hospital, Philadelphia, PA

Cornell Medical School, New York, NY, guest lecturer

St. Jude Biomedical Research Annual Symposium, Memphis, TN

 

2006

INTERNATIONAL:

British Society of Developmental Biology Annual meeting, York, England, session chair & speaker

3rd Canadian Developmental Biology Conference, Mont-Tremblant, Québec, Canada

MDC conference on Epithelial organization and Organ development, Berlin, Germany

3rd EMBO Conference on Regeneration and Tissue Repair Ascona, Switzerland

4th International Kloster Seeon Meeting on "Angiogenesis", Germany

KIX Symposium on “Genomic medical science and heart disease” Osaka, Japan, plenary speaker

Hospital for Sick Children, Toronto, Canada

 

NATIONAL:

Burnham Institute, La Jolla, CA

Keystone Symp. ‘Molecular Mechanisms of Cardiac Disease & Regeneration’, speaker, plenary session chair

NAVBO, developmental vascular biology workshop, Asilomar, CA

UCLA Institute for Pure and Applied Mathematics, Angiogenesis, NeoVascularization and

Morphogenesis workshop

UCSF liver center retreat, Mill valley, CA

FASEB conference on mechanisms of liver growth, development and disease, Snowmass, CO

Oregon Health Sciences University, Cell and Developmental Biology, Portland, OR

Developmental Dynamics symposium, Salt Lake City, UT

UCSF, Minimed series

University of Pennsylvania School of Medicine, Molecular Cardiology Research Center, Philadelphia, PA

Gordon conference on endothelial cell phenotypes in health & disease, Biddeford, ME

University of Chicago Medical School (invited to apply for chair of Molecular Genetics and Cell Biology)

Vasculata 2006, UCLA, instructor

University of Michigan Medical School, Ann Arbor, MI

UCSF BMS seminar series, San Francisco, CA

University of Massachusetts Medical School, Worcester, MA

Harvard Medical School, Children’s Hospital, Boston, MA (invited to apply for a chaired position)

 

2007

INTERNATIONAL:

National Center for Biotechnology, Madrid, Spain

Biozentrum, Basel, Switzerland

First Pan American Congress in Developmental Biology, Cancun, Mexico

ComBio, Sydney, Australia, Plenary speaker

ComBio, Sydney, Australia, Symposium speaker

University of Queensland, Brisbane, Australia

‘Drilling into life´s depth – innovative methods in molecular biology’, student organized symposium at the

      University of Würzburg

Foundation for Biomedical Research of the Academy of Athens, Greece

Zebrafish Development and Disease Course, Hubrecht Laboratory, Utrecht, the Netherlands

 

NATIONAL:

Systems Medicine Workshop, NHLBI, Bethesda, MD

New York University Medical School, Skirball Institute.

UCSF/Karolinska Institute Stem Cell Symposium

UCSD Cardiovascular Science Conference

West Coast SDB meeting, Asilomar, CA, session chair and speaker

Regenerative Medicine Seminar, Stanford University, Palo Alto, CA

Keystone Symposium on Tissue engineering and developmental biology, Snowbird, UT

University of Texas – Austin; Section of Molecular Cell and Developmental Biology Annual Retreat,

      Plenary speaker (declined because of conflict)

American Diabetes Association, Chicago, IL

4th Annual Symposium of the AHA Council on Basic Cardiovascular Sciences – Cardiovascular Repair and

      Regeneration: Structural and Molecular Approaches in the Cellular Era, Keystone, CO

FASEB conference on gastrointestinal tract XII: The molecular and integrative basis for GI

      development, homeostasis & disease, Snowmass, CO

Zebrafish investigators' workshop, Asilomar, CA

Princeton University, Department of Molecular Biology, invited by the graduate students

UNC, Chapel Hill, NC

 

2008

INTERNATIONAL:

“From Developmental Biology to tissue regeneration” international workshop, Santiago, Chile

International Symposium on ‘Stem cells in Development, Regeneration and Disease, Bangalore, India

Temasek Life Sciences Laboratory, Singapore (2 lectures and 1 seminar)

Centro Nacional de Investigaciones Cardiovasculares-CNIC, Madrid, Spain

Distinguished Scientist Lecture Series, Max Planck Institute for Developmental Biology, Tübingen, Germany,

      invited by the graduate students

J.W. Jenkinson Memorial Lectureship, University of Oxford

41st Japanese Society of Developmental Biology, International Society of Developmental Biology joint

      meeting, Tokushima City, Japan

XX International Congress of Genetics 2008, Berlin, Germany

Annual Conference, EU FP6 Integrated Project ‘HeartRepair’, Madrid, Spain

Journée Claude Bernard de la Société de Biologie, Paris, France (declined)

4th meeting of the Latin American Society of Developmental Biology, Buenos Aires, Argentina

 

NATIONAL:

NAVBO, developmental vascular biology workshop, Asilomar, CA

FASEB conference on mechanisms of liver growth, development and disease, Snowmass, CO

Iowa State University, Ames, Iowa

2008 Teratology Society meeting, Monterey, CA

2008 BCBC Retreat Plenary Speaker, Washington DC

Case Western Reserve University, Cleveland, OH (invited by the graduate students)

8th International Meeting on Zebrafish Development and Genetics, Madison, WI

Developmental Biology Symposium at the University of Minnesota, Minneapolis, MN

Woods Hole Embryology course, Woods Hole, MA

Tufts University, Boston, MA

UCSF, Cardiology Grand Rounds

Keystone Symposium on Pathological and Physiological Regulation of Cardiac Hypertrophy, (declined)

UC Davis, Davis, CA

University of Michigan Medical School, Ann Arbor, MI

SF-Japan Joint meeting on vertebrate organogenesis, San Francisco, CA

Dana-Farber Cancer Institute, Boston, MA

ASCB Annual Meeting, Symposium speaker, San Francisco, CA

 

 

UCSF COMMITTEES AND OTHER SERVICE (past 3 years)

2005-2006

Tetrad Graduate Curriculum Committee

PIBS executive Committee

Steering Committee, Program in Craniofacial and Mesenchymal Biology

UCSF Fellows Steering Committee

Department of Biochemistry/Biophysics Animal Welfare Committee

UCSF Fellows Search Committee

GESCR Committee

Executive Committee, Developmental Biology Program

Acting Director, Developmental Biology Program

UCSF CIRM review Committee

 

2006-2007

Tetrad Graduate Curriculum Committee

PIBS executive Committee

BMS executive Committee

Steering Committee, Program in Craniofacial and Mesenchymal Biology

UCSF Fellows Steering Committee

Department of Biochemistry/Biophysics Animal Welfare Committee

UCSF Fellows Search Committee

Cell Culture Facility Users Advisory Committee

GESCR Committee

Executive Committee, Developmental Biology Program

Co-Director, Liver Center

What Do PIs Look for in a Postdoc Applicant? Minority Postdoc Panel member

Human ESC Director Search Committee

 

2007-2008

Member of the Biochemistry/Biophysics Departmental Cabinet

Tetrad Graduate Curriculum Committee

PIBS executive Committee

BMS executive Committee

Steering Committee, Program in Craniofacial and Mesenchymal Biology

UCSF Fellows Steering Committee

Department of Biochemistry/Biophysics Animal Welfare Committee

UCSF Fellows Search Committee

GESCR Committee

Executive Committee, Developmental Biology Program

Co-Director, Liver Center

 

TEACHING

Graduate Students currently in the lab

Won-Suk Chung (BMS, Genentech and CIRM fellowships, entered grad school 2003)

Isla Cheung (Tetrad, ARCS fellowship, entered grad school 2004)

 

Students who have left the lab and their present position

Jon Alexander, M.D., Ph.D., 95-99 (MSTP, Tetrad, AHA Fellowship), winner of the Weintraub Award,

      Molecular Medicine Fellow, UCSF

Jeremy Reiter, M.D., Ph.D., 95-99 (MSTP, Tetrad, ARCS Fellowship), Assistant Professor, UCSF Dept of

      Biochemistry and Biophysics

Emily Walsh, Ph.D. 95-01 (Tetrad, HHMI Predoc. Fellowship), Program Manager, Alnylam Pharmaceuticals

Sally Horne, Ph.D. 96-03 (Tetrad, NSF and AHA Predoc. Fellowships), winner of the Weintraub Award,

      Postdoc with David Bilder, UCB

Holly Field, Ph.D. 98-03 (Tetrad), Postdoc with Mark Fishman, Novartis

Le Trinh, Ph.D. 98-04 (BMS, NSF and AHA Predoc. Fellowships), Postdoc with Scott Fraser, Caltech

Nick Osborne, Ph.D. 99-05 (BMS, NSF Predoctoral Fellowship), Postdoc with Terry Magnuson, UNC

Kevin Vogeli 01-06 (Tetrad, NSF Predoctoral Fellowship), Medical student, USC

Chantilly Munson 02-07 (Tetrad, NSF Predoctoral Fellowship), Assistant Professor, City College of San

      Francisco

 

Postdoctoral fellows currently in the lab

2002-present

Duc Dong, Ph.D.

University of Wisconsin, Madison

JDRF postdoctoral Fellowship; Hillblom Fellowship

2003-present

Takuya Sakaguchi, Ph.D.

National Institute of Genetics, Mishima, Japan

Toyobo Biological Foundation, APS fellowship, NIH K99

2003-present

Neil Chi, M.D., Ph.D.

Northwestern University, Illinois

Cardiology fellow; AHA Fellow to Faculty Award; NIH KO8

2003-present

Chong Shin, Ph.D.

U.T. Southwestern

NIH, NRSA

2004-present

Silvia Curado, Ph.D.

EMBL

CVRI fellowship

2004-present

Ryan Anderson, Ph.D.

Duke University

JDRF postdoctoral Fellowship and Training Grant Fellowships

2005-present

Amnon Schlegel, M.D., Ph.D.

Albert Einstein School of Medicine

Endocrinology fellow; NIH KO8

2005-present

Jan Huisken, Ph.D.

EMBL

Human Frontier Science Program Fellowship

2005-present

Donghun Shin, Ph.D.

Caltech

NIH training grant

2006-present

Dan Hesselson, Ph.D.

University of Wisconsin, Madison

Hillblom Fellowship

2007-present

Jiandong Liu, Ph.D.

University of Michigan, Ann Arbor

AHA postdoctoral Fellowship

2007-present

Chunyue Yin, Ph.D.

Vanderbilt University

JDRF postdoctoral Fellowship

2007-present

Lingfei Luo, Ph.D.

MPI, Göttingen, Germany

JDRF Senior Postdoctoral Fellowship

2007-present

Yoshiko Kametani, Ph.D.

Kyoto University, Japan

JSPS and HFSP fellowships

2007-present

Shane Herbert, Ph.D.

University of Leeds, UK

Sir Henry Wellcome Fellowship, UK

2007-present

Stephanie Woo, Ph.D.

University of Wisconsin, Madison

CVRI training grant

2008-present

Olov Andersson, Ph.D.

Karolinska Institute, Sweden

Swedish Research Council and EMBO fellowships

2008-present

 

Philipp Gut, M.D.

 

University of Heidelberg

DFG postdoctoral Fellowship

 

Postdoctoral Fellows who have left the lab and their present position

Leon Parker, Ph.D., Staff scientist, Genentech, San Francisco, CA

Chi-Yip Ho, Ph.D., Director, Microarray Facility, Samuel Lunenfeld Hospital, Toronto, Canada

Wayne Liao, Ph.D., Senior Staff scientist, Deltagen, Palo Alto, CA

Erik Kupperman, Ph.D., Senior scientist, Curagen, Cambridge

Birgitta Olofsson, Assistant Professor, Cambridge, England

Deborah Yelon, Ph.D., Associate Professor, Skirball Institute, NYU

Amy Sehnert, M.D., Director, cardioDX, Palo Alto, CA

Yutaka Kikuchi, Ph.D., Professor, Hiroshima University, Japan

Tom Bartman, M.D., Ph.D., Assistant Professor, Cincinnati Children's Hospital Medical Center

Julie Frantsve, Ph.D., Assistant Director, ADA Council on Scientific Affairs

Heather Verkade, Ph.D., Assistant Professor, Monash University, Melbourne, Australia

Federica Bertocchini, Ph.D., Postdoc, UCL, London, UK

Dimitris Beis, Ph.D., Assistant Professor, Academy of Athens, Greece

Tracy Mitchell, Ph.D., Scientist, Eyetech, Boston

Elke Ober, Ph.D., Assistant Professor, Mill Hill, London, UK

Suk-Won Jin, Ph.D., Assistant Professor, University of North Carolina, Chapel Hill, NC

Ian Scott, Ph.D., Assistant Professor, The Hospital for Sick Children, Toronto, Canada

Leonard D’Amico, Ph.D., Postdoctoral Fellow, Seattle, WA

Tatiana Hochgreb, Ph.D., Postdoctoral Fellow, Caltech

Benno Jungblut, Ph.D., Junior Group Leader, MPI Bad Nauheim, Germany

Pia Aanstad, Ph.D., Assistant Professor, University of Innsbruck, Austria

Massimo Santoro, Ph.D., Assistant Professor, University of Turino, Italy

Wiebke Herzog, Ph.D., Junior Group Leader, MPI Muenster, Germany

Paul Scherz, Ph.D., Student, University of Notre Dame, IN

Michel Bagnat, Ph.D., Assistant Professor, Duke University Medical Center, Durham, NC

 

Special students and other lab visitors (since 2000)

2001

Ronan Bree, visiting Ph.D. student from Galway, Ireland

2002-2003

HJ Tsai, Ph.D., sabbatical Professor from National University of Taiwan

2002

Annie Ng, Ph.D., visiting scholar from the Ludwig Institute, Melbourne, Australia

2005

Eva Denise Martin, visiting Ph.D. student from Galway, Ireland

2005

Jessica Ahlsiö, visiting Ph.D. student from Lund University, Sweden

2005

Joaquin Grego Bessa, visiting Ph.D. student from Madrid, Spain

2005

Sarah Murphy, middle school teacher from San Francisco

2005-2006

Rima Arnaout, Sarnoff fellow from Harvard Medical School

2005-2006

Colin Lorentzen, Diana Kuo, UCB undergraduates

2006

Guillaume Gibon, visiting master’s student from Paris, France

2006

Pankaj Sahai, SRTP student from the University of Puerto Rico

2006, 2007

Linda Setiawan, visiting Diploma student from Freie Universitaet Berlin

2006

Frederic Marteau, Ph.D. sabbatical scientist from the Universite libre de Bruxelles

2007

Emmanuelle Szenker, visiting master’s student from Paris, France

2007

Gabriella Pesce, visiting postdoctoral fellow from University of Piemonte, Italy

2007

Nik Tomanovic, visiting student from Cambridge University, UK

2008

Marine Beinat, visiting master’s student from Paris, France

2008

Lillian Ng, UCSD undergraduate

 

Faculty Mentoring: Darren Schneider (KO8 mentor), Miguel Ramalho-Santos, Pao-Tien Chuang, Jeremy Reiter, David Bilder (UCB), Maria Barna, Ross Metzger.  For these junior faculty members, I have read and critiqued grant applications and manuscripts.  I have also offered advice and feedback re various scientific and academic growth matters.

 

Teaching Award:

2003

Outstanding Faculty Mentorship Award, UCSF

 

PEER REVIEWED RESEARCH ARTICLES

*indicates 12 most significant publications

 

1.      Stainier, D.Y.R. and Gilbert, W. (1989).  The monoclonal antibody B30 recognizes a specific neuronal cell surface antigen in the developing mesencephalic trigeminal nucleus of the mouse.  J. Neurosci. 9: 2468-2485.

 

2.      Stainier, D.Y.R. and Gilbert, W. (1990).  Pioneer neurons in the mouse trigeminal sensory system.  Proc. Natl. Acad. Sci. USA 87: 923-927.

 

3.      Stainier, D.Y.R. and Gilbert, W. (1991).  Neuronal differentiation and maturation in the mouse trigeminal sensory system, in vivo and in vitro.  J. Comp. Neurol.  311: 300-312.

 

4.      Stainier, D.Y.R., Bilder, D.H. and Gilbert, W (1991). The B30 ganglioside is a cell surface marker for neural crest-derived neurons in the developing mouse.  Developmental Biology 144: 177-188.

 

5.      Stainier, D.Y.R., Bilder, D.H. and Gilbert, W (1991).  Spatial domains in the developing forebrain: developmental regulation of a restricted cell surface protein.  Developmental Biology 147: 22-31.

 

6.      Stainier, D.Y.R. and Fishman, M.C. (1992).  Patterning the zebrafish heart tube: acquisition of anteroposterior polarity.  Developmental Biology 153: 91-101.

 

7.      Stainier, D.Y.R., Lee, R.K. and Fishman, M.C. (1993).  Cardiovascular development in the zebrafish:I.Myocardial fate map and heart tube formation.  Development 119: 31-40.

 

8.      Abdelilah, S., Solnica-Krezel, L., Stainier, D.Y.R. and Driever, W. (1994).  Implications for dorsoventral axis determination from the zebrafish mutation janus.  Nature 370: 468-471.

 

9.      Lee, R.K.K., Stainier, D.Y.R., Weinstein, B.W. and Fishman, M.C. (1994).  Cardiovascular development in the zebrafish:  II.  Endocardial progenitors are sequestered within the heart field.   Development 120: 3361-3366.

 

10.     Stainier, D.Y.R., Weinstein, B.M.W., Detrich H.W., Zon, L.I. and Fishman, M.C. (1995). cloche, an early acting zebrafish gene, is required by both the endothelial and hematopoietic lineages.  Development 121, 3141-3150.

 

11.     Driever, W., Solnica-Krezel, L., Schier, A.F., Neuhauss, S.C.F., Malicki, J., Stemple, D.L., Stainier, D.Y.R., Zwartkruis, F., Abdelilah, S., Rangini, Z., Belak, J. and Boggs, C. (1996).  A genetic screen for mutations affecting embryogenesis in zebrafish.  Development 123:37-46.

 

12.     Solnica-Krezel, L., Stemple, D. L., Mountcastle-Shah, E., Rangini, Z., Neuhauss, S. C. F., Malicki, J., Schier, A. F., Stainier, D. Y. R., Zwartkruis, F., Abdelilah, S. and Driever, W. (1996).   Mutations affecting cell fates and cellular rearrangements during gastrulation in zebrafish.  Development 123: 67-80.

 

13.     Stemple, D. L., Solnica-Krezel, L., Zwartkruis, F., Neuhauss, S. C. F., Schier, A. F., Malicki, J., Stainier, D. Y. R., Abdelilah, S., Rangini, Z., Mountcastle-Shah, E. and Driever, W. (1996).  Mutations affecting development of the notochord in zebrafish.  Development 123: 117-128S

 

14.     Schier, A. F., Neuhauss, S. C. F., Harvey, M., Malicki, J., Solnica-Krezel, L., Stainier, D. Y. R., Zwartkruis, F., Abdelilah, S., Stemple, D. L., Rangini, Z., Yang, H. and Driever, W. (1996).  Mutations affecting the development of the embryonic zebrafish brain.  Development 123: 165-178.

 

15.     Abdelilah, S., Mountcastle-Shah, E., Harvey, M., Solnica-Krezel, L., Schier, A. F., Stemple, D. L., Malicki, J., Neuhauss, S. C. F., Zwartkruis, F., Stainier, D. Y. R., Rangini, Z. and Driever, W. (1996).  Mutations affecting neural survival in the zebrafish, Danio rerio.  Development 123:217-227.

 

16.     Malicki, J., Neuhauss, S. C. F., Schier, A. F., Solnica-Krezel, L., Stemple, D. L., Stainier, D. Y. R., Abdelilah, S., Zwartkruis, F., Rangini, Z. and Driever, W. (1996).  Mutations affecting development of the zebrafish retina.  Development 123: 263-273.

 

17.     Malicki, J., Schier, A. F., Solnica-Krezel, L., Stemple, D. L., Neuhauss, S. C. F., Stainier, D. Y. R., Abdelilah, S., Rangini, Z., Zwartkruis, F. and Driever, W. (1996).  Mutations affecting development of the zebrafish ear.  Development 123: 275-283.

 

18.     Stainier, D. Y. R., Fouquet, B., Chen, J.-N., Warren, K. S., Weinstein, B. M., Meiler, S., Mohideen, M.-A. P. K., Neuhauss, S. C. F., Solnica-Krezel, L., Schier, A. F., Zwartkruis, F., Stemple, D. L., Malicki, J., Driever, W. and Fishman, M. C. (1996).  Mutations affecting the formation and function of the cardiovascular system in the zebrafish embryo.  Development 123:285-292.

 

19.     Weinstein, B. M., Schier, A. F., Abdelilah, S., Malicki, J., Solnica-Krezel, L., Stemple, D. L., Stainier, D. Y. R., Zwartkruis, F., Driever, W. and Fishman, M. C. (1996).  Hematopoietic mutations in the zebrafish.  Development 123: 303-309.

 

20.     Neuhauss, S. C. F., Solnica-Krezel, L., Schier, A. F., Zwartkruis, F., Stemple, D. L., Malicki, J., Abdelilah, S., Stainier, D. Y. R. and Driever, W. (1996).  Mutations affecting craniofacial development in zebrafish.  Development 123: 357-367.

 

21.     Ticho, B.S., Stainier, D.Y.R., Fishman, M.C. and Breitbart, R.E. (1996).  Three zebrafish MEF2 genes delineate somitic and cardiac muscle development in wild-type and mutant embryos.  Mechanisms of Development 59:205-218.

 

22.     Liao, W., Bisgrove, B.W., Sawyer, H., Hug, B., Bell, B., Peters, K., Grunwald, D.J. and Stainier, D.Y.R. (1997).  The zebrafish gene cloche acts upstream of a flk-1 homologue to regulate endothelial cell differentiation.  Development 124: 381-389.

 

23.     Alexander, J., Stainier, D.Y.R. and Yelon, D. (1998).  Screening mosaic F1 females for mutations affecting zebrafish heart induction and patterning.  Developmental Genetics 22: 288-299.  D.Y.R.S. senior author.

 

24.     Lyons, M.S., Bell, B., Stainier, D.Y.R. and Peters, K. (1998).  Isolation of the zebrafish homologues for the tie-1 and tie-2 endothelium specific receptor tyrosine kinases.  Developmental Dynamics 212: 133-140.

 

25.     Haun, C., Alexander, J., Stainier, D.Y.R. and Okkema, P.G. (1998).  Rescue of C. elegans pharyngeal development by a vertebrate heart specification gene.  Proc. Natl. Acad. Sci. USA 95: 5072-5075.

 

26.     Reifers, F., Bohli, H., Walsh, E.C., Stainier, D.Y.R. and Brand, M. (1998).  Fgf8 is mutated in zebrafish acerebellar mutants and is required for maintenance of midbrain-hindbrain boundary development and somitogenesis.  Development 125: 2381-2395.

 

27.     Karlovich, C.A., John, R., Ramirez, L., Stainier, D.Y.R. and Myers, R.M. (1998).  Characterization of the Huntington disease (HD) gene homolog in the zebrafish Danio rerio.  Gene 217: 117-125.

 

28.     Parker, L.H. and Stainier, D.Y.R. (1999).  Cell-autonomous and non-autonomous requirements for the zebrafish gene cloche in hematopoiesis.  Development 126: 2643-2651.

 

29.     Yelon, D., Horne, S.A. and Stainier, D.Y.R. (1999).  Restricted expression of cardiac myosin genes reveals regulated aspects of heart tube assembly in zebrafish.  Developmental Biology 214: 23-37.

 

30.     Alexander, J., Rothenberg, M., Henry, G.L. and Stainier, D.Y.R. (1999).  casanova plays an early and essential role in endoderm formation in zebrafish.  Developmental Biology 215: 343-357.

 

31.     Ho, C.Y., Houart, C., Wilson, S.W., and Stainier, D.Y.R. (1999).  A role for the extraembryonic yolk syncytial layer in patterning the zebrafish embryo suggested by properties of the Hex gene.  Current Biology 9: 1131-1134.

 

*32.   Alexander, J. and Stainier, D.Y.R. (1999).  A molecular pathway leading to endoderm formation in zebrafish.  Current Biology 9: 1147-1157.

         See Commentary in Current Biology 9: R812-815.

 

33.     Reiter, J., Alexander, J., Rodaway, A., Yelon, D. Patient, R., Holder, N. and Stainier, D.Y.R. (1999).  Gata5 is required for the development of the heart and endoderm in zebrafish.  Genes & Development 13: 2983-2995.

 

34.     Reifers, F., Walsh, E., Leger, S., Stainier, D.Y.R. and Brand, M. (2000).  Induction and differentiation of the zebrafish heart requires Fgf8.  Development 127: 225-235.

 

35.         Griffin, K.J.P., Stoller, J., Gibson, M., Chen, S., Yelon, D., Stainier, D.Y.R. and Kimelman, D. (2000).  A conserved role for H15-related T-box transcription factors in zebrafish and Drosophila heart formation.  Developmental Biology 218: 235-247.

 

36.     Kikuchi, Y., Trinh, L., Reiter, J.F., Alexander, A., Yelon, D. and Stainier, D.Y.R. (2000).  The zebrafish bonnie and clyde gene encodes a Mix family homeodomain protein that regulates the generation of endodermal precursors.  Genes & Development 14: 1279-1289.

 

37.         Yelon, D., Ticho, B, Halpern, M., Ruvinsky, I., Ho, R., Silver, L.M. and Stainier, D.Y.R. (2000).  The bHLH transcription factor Hand2 plays parallel roles in zebrafish heart and pectoral fin development.  Development 127: 2573-2582. 

         See Commentary in Nature 406, 953-954.

 

*38.   Kupperman, E., An, S., Osborne, N., Waldron, S. and Stainier, D.Y.R. (2000).  A sphingosine 1-phosphate receptor regulates cell migration during vertebrate heart development.  Nature 406: 192-195. 

         See Commentaries in Nature 406, 141-142 and in Science 289, 509.

 

39.     Liao, W., Ho, C.-H., Yan, Y.L., Postlethwait, J. and and Stainier, D.Y.R. (2000).  Hhex and Scl function in parallel to regulate early endothelial and blood differentiation in zebrafish.  Development 127: 4303-4313.

 

40.         Motoike, T., Loughna, S., Perens, E. Roman, B.L., Liao, W., Chau, T.C., Richardson, C.D., Kawate, T., Kuno, J., Weinstein, B.M, Stainier, D.Y.R. and Sato, T.N. (2000). Universal GFP Reporter for the Study of Vascular Development.  Genesis 28: 75-81.

 

41.         Reiter, J.F, Kikuchi, Y. and Stainier, D.Y.R. (2001).  Multiple roles for Gata5 in zebrafish endoderm formation.  Development 128: 125-135.

 

42.         Reiter, J.F., Verkade, H. and Stainier, D.Y.R. (2001).  Bmp2b and Oep promote early myocardial differentiation through their regulation of gata5.  Developmental Biology 234: 330-338.

 

43.     Kikuchi, Y., Agathon, A., Alexander, J., Thisse, C., Waldron, S., Yelon, D., Thisse, B. and Stainier,

D.Y.R. (2001).  casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish.  Genes & Development 15: 1493-1505.

 

*44.   Walsh, E.C. and Stainier, D.Y.R. (2001).  UDP-glucose dehydrogenase required for cardiac valve formation in zebrafish.  Science 293: 1670-1673.  Highlighted in Faculty of 1000.

 

45.     Horne-Badovinac, S., Lin, D., Waldron, S., Schwartz, M. Pawson, A., Jan, Y.N., Stainier, D.Y.R. and Abdelilah-Seyfried, S. (2001).  Positional cloning of heart and soul reveals multiple roles for PKCl in zebrafish organogenesis.  Current Biology 11:1492-1502.  D.Y.R.S. senior author.

 

46.     Keegan, B.R., Feldman, J.L., Lee, D.H., Koos, D.S., Ho, R.K., Stainier, D.Y.R. and Yelon D. (2002).  The elongation factors Pandora/Spt6 and Foggy/Spt5 promote transcription in the zebrafish embryo.  Development 129: 1623-1632.

 

47.     Sehnert, A., Huq, A., Weinstein, B., Fishman, M.C. and Stainier, D.Y.R. (2002). Cardiac Troponin T plays

         essential roles in sarcomere assembly and cardiac contractility.  Nature Genetics 31: 106-110.

 

48.     The Ciona genome consortium (Dehal et al.) (2002).  The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.  Science 298: 2157-2167.

 

49.     Field, H., Ober, E.A., Roeser, T. and Stainier, D.Y.R. (2003).  Formation of the digestive system in zebrafish: I. Liver morphogenesis.  Developmental Biology 253: 279-290.

 

50.     Miller, C.T., Yelon, D., Stainier, D.Y.R. and Kimmel, C.B. (2003).  Two endothelin1 effectors, Hand2 and Bapx1, pattern ventral pharyngeal cartilage and the jaw joint.  Development 130:1353-1365.

 

51.     Field, H.A., Dong, P.D.S., Beis, D. and Stainier, D.Y.R. (2003).  Formation of the digestive system in zebrafish: II. Pancreas morphogenesis.  Developmental Biology 261: 197-208.

 

52.     Trinh, L.A., Meyer D. and Stainier, D.Y.R. (2003).  The Mix family homeodomain gene bonnie and clyde functions with other components of the Nodal signaling pathway to regulate neural patterning in zebrafish.  Development 130: 4989-4998.

 

53.     Tidyman, W.E., Sehnert, A.J., Huq, A., Agard, J., Deegan, F., Stainier, D.Y.R. and Ordahl, C.P. (2003).  In vivo regulation of the chicken cardiac troponin T gene promoter in zebrafish.  Dev. Dyn. 227:

         484-496.

 

*54.   Horne-Badovinac, S., Rebagliati, M. and Stainier, D.Y.R. (2003).  A cellular framework for gut looping morphogenesis in zebrafish.  Science 302: 662-665. Highlighted in Faculty of 1000.

 

55.     Berdougo, E., Coleman, H., Lee, D.H., Stainier, D.Y.R. and Yelon, D. (2003).  Mutation of weak atrium/atrial myosin heavy chain disrupts atrial function and influences ventricular morphogenesis in zebrafish. Development 130: 6121-6129.

 

56.     Ober, E.A., Olofsson, B., Makinen, T., Jin, S.-W., Shoji, W., Koh, G.Y., Alitalo, K. and Stainier, D.Y.R. (2004).  Vegfc is required for vascular development and endoderm morphogenesis in zebrafish.  EMBO reports 5: 78-84. 

 

57.    Reim, G., Mizoguchi, T., Stainier, D.Y., Kikuchi, Y. and Brand, M. (2004).  The POU domain protein Spg (Pou2/Oct4) is essential for endoderm formation in cooperation with the HMG domain protein Casanova.  Dev. Cell 6: 91-101.

 

58.    Trinh, L.A. and Stainier, D.Y.R. (2004). Fibronectin regulates epithelial organization during myocardial

         migration in zebrafish.  Dev. Cell 6: 371-382.

 

59.    Parker, L.H., Schmidt, M., Jin, S.-W., Gray, A.M., Beis, D., Pham, T., Frantz, G., Palmieri, S., Hillan, K., Stainier, D.Y.R., de Sauvage, F.J., Ye, W. (2004).  A novel endothelial cell derived secreted factor VEMF regulates vascular tube formation.  Nature 428: 754-758.

 

60.    Kikuchi, Y., Verkade, H., Reiter, J.F., Kim, C.-H., Chitnis, A.B., Kuroiwa, A. and Stainier, D.Y.R. (2004).  Notch signaling can regulate endoderm formation in zebrafish. Dev. Dyn. 229: 756-762.

 

61.    Bartman, T., Walsh, E.C., Wen, K.-K., McKane, M., Ren, J., Alexander, J., Rubenstein, P.A. and Stainier, D.Y.R.  (2004).  Early Myocardial Function Affects Endocardial Cushion Development in Zebrafish.  PLoS Biology 2: 673-681.

 

62.    Trinh, L.A., Yelon, D. and Stainier, D.Y.R. (2005).  Hand2 regulates epithelial formation during myocardial differentiation.  Current Biology 15: 441-446.

 

63.    Qian, F., Zhen, F., Ong, C., Jin, S.-W., Soo, M.H., Stainier, D.Y.R., Lin, S., Peng, J. and Wen, Z. (2005).  Microarray analysis of zebrafish cloche mutant using amplified cDNA and identification of potential downstream target genes.  Dev. Dyn. 233: 1163-1172.

 

64.    Bree, R.T., McLoughlin, S., Jin, S.-W., McMeel, O.M., Stainier, D.Y.R., Grealy, M. and Byrnes, L. (2005).  nanor, a novel zygotic gene, is expressed initially at the midblastula transition in zebrafish.  Biochem. Biophys. Res. Commun. 333: 722-728.

 

65.     Ng, A.N.Y., de Jong-Curtain, T.A., White, S.J., Mawdsley, D.J., Shin, J., Appel, B., Dong P.D.S., Stainier, D.Y.R. and Heath, J.K. (2005).  Formation of the digestive system in zebrafish.  III. Intestinal epithelium morphogenesis. Developmental Biology 286, 114-135.

 

66.     Beis, D., Bartman, T., Jin, S.-W., Scott, I.C., D’Amico, L., Ober, E.A., Verkade, H., Frantsve, J., Field,

         H.A., Wehman, A., Baier, H., Talafuss, A., Bally-Cuif, Chen, J.-N., Stainier, D.Y.R. and Jungblut, B.

         (2005).  Genetic and cellular analyses of zebrafish atrio-ventricular cushion and valve development. 

Development 132: 4193-4204.  D.Y.R.S. senior author.

 

67.     Jin, S.-W, Beis, D., Mitchell, T., Chen, J.-N. and Stainier, D.Y.R. (2005).  Cellular and molecular analyses of vascular tube and lumen formation in zebrafish. Development 132: 5199-209. 

 

68.     Corbit, K.C., Aanstad, P., Singla, V., Norman, A.R., Stainier, D.Y.R. and Reiter, J.F. (2005).  Vertebrate

         Smoothened functions at the primary cilium.  Nature 437: 1018-1021.

 

*69.   Ober, E.A., Verkade, H., Field, H.A. and Stainier, D.Y.R. (2006).  Mesodermal Wnt2b signaling positively regulates liver specification.  Nature 442: 688-691.  Highlighted in Nature Genetics, Nature Cell Biology, Faculty of 1000 and Current Biology.

 

*70.   Vogeli, K.M., Jin, S.-W., Martin, G.R. and Stainier, D.Y.R. (2006).  A common progenitor for hematopoietic and endothelial lineages in the zebrafish gastrula.  Nature 443: 337-339.  Highlighted in Faculty of 1000.

 

71.     Sakaguchi, T., Kikuchi, Y., Kuroiwa, A., Takeda, H. and Stainier, D.Y.R. (2006).  The yolk syncytial layer regulates myocardial migration by influencing extracellular matrix assembly in zebrafish.  Development 133: 4063-4072.

 

72.     Schlegel, A. and Stainier, D.Y.R. (2006).  Microsomal triglyceride transfer protein is required for yolk lipid utilization and absorption of dietary lipids in zebrafish larvae.  Biochemistry 45: 15179-15187.

 

73.     D’Amico, L., Scott, I.C., Jungblut, B. and Stainier, D.Y.R. (2007).  A mutation in zebrafish hgmcr1b reveals a role for isoprenoids in vertebrate heart tube formation.  Current Biology 17: 252-259.

 

74.     Dong, P.D.S., Munson, C., Norton, W., Crosnier, C., Pan, X., Gong, Z., Neumann, C.J. and Stainier, D.Y.R. (2007).  Fgf10 regulates hepatopancreatic ductal system patterning and differentiation.  Nature Genetics 39: 397-402.

 

75.     Curado, S., Anderson, R.M., Jungblut, B., Mumm, J., Schroeter, E. and Stainier, D.Y.R. (2007). 

         Conditional targeted cell ablation in zebrafish: A new tool for regeneration studies.  Developmental

         Dynamics 236: 1025-35.

 

76.     Scott, I.C., Masri, B., D’Amico, L., Jin, S.-W., Jungblut, B., Wehman, A., Baier, H., Audigier, Y. and Stainier, D.Y.R. (2007).  The G protein-coupled receptor Agtrl1b regulates early development of myocardial progenitors.  Developmental Cell 12: 403-413.  Highlighted in Developmental Cell and Cell.

 

77.     Shin D., Shin C.H., Tucker J., Ober E.A., Rentzsch F., Poss K.D., Hammerschmidt M., Mullins M.C. and Stainier D.Y.R. (2007).  Bmp and Fgf signaling are essential for liver specification in zebrafish. Development 134: 2041-2050.

 

78.     Jin, S.W., Herzog, W., Santoro, M.M., Mitchell, T.S., Frantsve, J., Jungblut, B., Beis, D., Scott, I.C., D'Amico, L.A., Ober, E.A., Verkade, H., Field, H.A., Chi, N.C., Wehman, A.M., Baier, H., and Stainier, D.Y.R. (2007) A transgene-assisted genetic screen identifies essential regulators of vascular development in vertebrate embryos. Developmental Biology 307: 29-42

 

79.     Arnaout, R., Ferrer, T., Huisken, J., Spitzer, K., Stainier, D.Y.R.†, Tristani-Firouzi, M.†, and Chi, N.C.† (2007) Zebrafish model for human long QT syndrome. Proc. Natl. Acad. Sci. USA 104: 11316-11321.        †corresponding authors.

 

*80.   Bagnat, M., Cheung, I.D., Mostov, K.E. and Stainier D.Y.R. (2007).  Genetic control of single lumen formation in the zebrafish gut.  Nature Cell Biology 9: 954-960.  Highlighted in Nature Cell Biology, J, Cell Biology, Faculty of 1000 and Nature Reviews Genetics.

 

81.     Huisken, J. and and Stainier D.Y.R. (2007).  Even fluorescence excitation by multi-directional selective plane illumination microscopy (mSPIM). Optics Letters 32: 2608-2610.

 

*82.   Santoro, M.M., Samuel, T., Mitchell, T.S., Reed, J.C. and Stainier D.Y.R. (2007). Birc2/Iap1 regulates endothelial cell integrity and blood vessel homeostasis.  Nature Genetics 39: 1397-1402.  Highlighted in Nature Genetics.

 

83.     Scherz, P.J., Huisken J., Sahai-Hernandez, P. and Stainier D.Y.R. (2008).  High speed imaging of developing heart valves reveals interplay of morphogenesis and function.  Development 135: 1179-1187.

 

84.     Chi, N.C, Shaw R.M., De Val, S., Kang, G., Jan, L.Y., Black B.L. and Stainier D.Y.R. (2008).  Foxn4 directly regulates tbx2b expression and atrioventricular canal formation. Genes & Development 22: 734-9.

 

*85.   Chi, N.C., Shaw R.M., Jungblut, B., Huisken J., Arnaout, R., Scott, I.C., Beis, D., Ferrer, T., Xiao, T., Baier, H., Jan, L.Y., Tristani-Firouzi, M. and Stainier D.Y.R. (2008).  Genetic and physiologic dissection of the vertebrate cardiac conduction system.  PLoS Biology 6, 1006-1019.

 

*86.   Chung, W-S. and Stainier D.Y.R. (2008).  Intra-endodermal interactions are required for pancreatic b-cell induction.  Developmental Cell 14: 582-593. Highlighted in Faculty of 1000.

 

87.     Curado, S., Stainier, D.Y.R. and Anderson, R.M. (2008). Nitroreductase-mediated cell/tissue ablation in zebrafish: a spatially and temporally controlled ablation method with applications in developmental and regeneration studies.  Nature Protocol 3: 948-954. D.Y.R.S. senior author.

 

88.     Shin C.H., Chung, W-S., Hong S-K., Ober E.A., Verkade, H., Field, H., Huisken, J. and Stainier D.Y.R. (2008).  Multiple roles for Med12 in vertebrate endoderm development.  Developmental Biology, 317: 467-479.

 

*89.   Dong, P.D.S., Provost, E., Leach S.D. and Stainier, D.Y.R. (2008).  Graded levels of Ptf1a differentially regulate endocrine and exocrine fates in the developing pancreas. Genes & Development 22: 1445-1450.

 

90.     Bit-Avragim, N., Hellwig, N., Rudolph, F., Munson, C., Stainier, D.Y.R., and Abdelilah-Seyfried, S. (2008).  Divergent polarization mechanisms during vertebrate epithelial development mediated by the Crumbs complex protein Nagie oko. J. Cell Sci. 121: 2503-2510.

 

91.     Fish, J.E., Santoro, M.M., Morton, S.U., Yu, S., Yeh, R.F., Wythe, J.D., Ivey, K.N., Bruneau, B.G., Stainier D.Y.R. and Srivastava, D. (2008).  miR-126 regulates angiogenic signaling and vascular integrity. Developmental Cell 15: 271-284.   

 

92.     Morton, S.U., Scherz, P.J., Cordes, K.R., Ivey, K.N., Stainier D.Y.R. and Srivastava, D. (2008).  microRNA regulation of cardiac patterning. Proc. Natl. Acad. Sci. USA, in press.

 

*93.   Sakaguchi, T.F., Sadler, K.C., Crosnier, C. and Stainier, D.Y.R. (2008).  Endothelial signals modulate hepatocyte apico-basal polarization in zebrafish.  Current Biology, in press. 

 

94.     De Val, S., Chi, N.C, Meadows, S.M., Minovitsky, S., Anderson, J., Harris, I.A., Ehlers, M.L., Agarwal, P., Visel, A., Xu, S.-M., Pennacchio, L.A., Dubchak, I., Krieg, P.A., Stainier D.Y.R. and Black B.L. (2008).  A Forkhead-Ets transcription factor code for vascular development.  Cell, in press.

 

95.     Munson, C., Huisken, H., Bit-Avragim, N., Kuo, T., Dong, P.D., Ober E.A., Verkade, H., Abdelilah-Seyfried, S. and Stainier, D.Y.R. (2008).  Regulation of neurocoel morphogenesis by Pard6gb. Developmental Biology, in press.

 

96.     Chung, W-S., Shin, C.H. and Stainier D.Y.R. (2008).  Bmp2 signaling regulates the hepatic vs pancreatic fate decision.  Developmental Cell, in press.

 

Review Articles and Book Chapters

 

1.      Stainier, D.Y.R. and Fishman, M.C. (1993).  Cardiac morphogenesis in the zebrafish, patterning the heart tube along the anteroposterior axis. In: Bernfield, M. (ed), Molecular Basis of Morphogenesis, 51 st Annual Symposium of the Society for Developmental Biology, John Wiley & Sons, New York, NY, pp 77-89.

 

2.      Stainier, D.Y.R. and Fishman, M.C. (1994).  The zebrafish as a model system to study cardiovascular development.  Trends in Cardiovascular Medicine 4: 207-212.

 

3.      Fishman, M.C. and Stainier, D.Y.R. (1994).  Cardiovascular development:  Prospects for a genetic approach.  Circulation Research 74: 757-763.

 

4.      Fishman, M.C., Stainier, D.Y.R.S., Breitbart, R. and Westerfield, M. (1997).  Zebrafish:  Genetic and embryological methods in a transparent vertebrate embryo.  In: Emerson, C.P. and Sweeney, H.L. (eds), Methods in Cell Biology, vol.52, Methods in Muscle Biology, Academic Press, San Diego, CA, pp 67-82.

 

5.      Alexander, J. and Stainier, D.Y.R. (1999).  Mutations affecting cardiac development in zebrafish.  In Heart Development.: (eds. Harvey, R. and Rosenthal, N.), pp. 91-110, Academic Press, San Diego, CA, pp 91-110.

 

6.      Parker, L.H., Zon, L. and Stainier, D.Y.R. (1999).  Blood and vascular gene expression.  In: Detrich, W., Zon, L. and Westerfield, M. (eds), Methods in Cell Biology, The Zebrafish, Academic Press, San Diego, CA, pp 313-336.

 

7.      Yelon, D. and Stainier, D.Y.R. (1999).  Patterning during organogenesis: genetic analysis of cardiac chamber formation.  Semin. Cell. Dev. Biol. 10: 93-98.

 

8.      Walsh, E. and Stainier, D.Y.R. (2000).  Cardiac development in vertebrates.  In Genetic models in Cardiorespiratory Biology (eds. Haddad, G.G. and Xu, T.; ex. ed. Lenfant, C.).  Marcel Dekker, NY, pp 203-238.

 

9.      Stainier, D.Y.R. (2001).  Zebrafish genetics and vertebrate heart formation.  Nature Reviews Genetics   2: 39-48.

 

10.     Warga, R.M. and Stainier, D.Y.R. (2002).  The guts of endoderm formation.  In Pattern Formation in Zebrafish (ed. Solnica-Krezel, L.).  Springer-Verlag, Berlin, pp 28-47.

 

11.     Stainier, D.Y.R. (2002).  (Traduit par Simone Gilgenkrantz).  Contribution du poisson zèbre à l’étude moléculaire du développement du coeur des vertébrés.  Médecine/Sciences 18:448-456.

 

12.     Jin, S-K, Jungblut, B. and Stainier, D.Y.R. (2002).  Angiogenesis during zebrafish development.  In Genetics of Angiogenesis, (ed. Jay Hoying).  Bios, Oxford pp. 101-118.

 

13.     Yelon, D. and Stainier, D.Y.R. (2002).  Pattern formation: swimming in retinoic acid.  Current Biology 12: R707-709.

 

14.     Scott, I. and Stainier, D.Y.R. (2002).  Fishing out a new heart.  Science 298: 2141-2142.

 

15.     Stainier, D.Y.R., Beis, D., Jungblut, B. and Bartman, T. (2002).  Endocardial cushion formation in zebrafish.  In The Cardiovascular System, proceedings of the 67th CSH Symposium on Quantitative Biology 67: 49-56.

 

16.     Stainier, D.Y.R. (2002). A glimpse into the molecular entrails of endoderm formation.  Genes & Development 16: 893-907.

 

17.     Sehnert, A. and Stainier, D.Y.R. (2002).  A window to the heart: can zebrafish mutants help us understand heart disease in humans?  Trends in Genetics 18: 491-494.

 

18.     Ober, E.A., Field, H.A. and Stainier, D.Y.R. (2003).  From endoderm formation to liver and pancreas development in zebrafish.  Mechanisms of Development 120: 5-18.

 

19.     Osborne, N. and Stainier, D.Y.R. (2003).  Lipid receptors in cardiovascular development.  Annual Review in Physiology 65: 23-43.

 

20.     Stainier, D.Y.R. and Pourquie, O. (2003).  Entrails, heart, brain, limbs, and lymphatics, a recipe for success?  Dev. Cell. 5: 193-196.

 

21.     Scott, I. and Stainier, D.Y.R. (2003).  Twisting the body into shape.  Nature 425: 461-463.

 

22.     Trinh, L.A. and Stainier, D.Y.R. (2004).  Cardiac Development.  In: Detrich, W., Zon, L. and Westerfield, M. (eds), Methods in Cell Biology, The Zebrafish, Academic Press, San Diego, CA, pp 455-473.

 

23.     Stainier, D.Y.R. (2005).  No organ left behind: Tales of gut development and evolution.  Science 307: 1902-1904.

 

24.     Beis, D. and Stainier, D.Y.R. (2005).  In vivo cell biology: following the zebrafish trend.  Trends in Cell Biology 16: 105-112.

 

25.     Stainier, D.Y.R. (2006).  No stem cell is an islet (yet).  NEJM 354: 521-523.

 

26.     Curado, S. and Stainier, D.Y.R. (2006). The HeArt of Regeneration.  Cell 127: 462-464.

 

27.     Schegel, A. and Stainier, D.Y.R. (2007).  Lessons from “lower” organisms: what worms, flies, and zebrafish can teach us about human energy metabolism.  PLoS Genetics 3: 2037-2048